Synaptic Function

Neurexin is a presynaptic membrane adhesion molecule on neurons, important in the formation and specificity of synapses. It binds to neuroligin in the neuronal synapse. Within the presynaptic neuron, it associates with vesicular trafficking proteins including CASK and Mint.

Neuroligin is a postsynaptic membrane protein that binds to Neurexin, helping to form and maintain neuronal synapses. Within the postsynaptic neuron, it binds to proteins such as PSD-95, which recruits receptors and channels to the synapse.
 

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CD325 (N-cadherin) is important for neuronal migration during development, neurite outgrowth and target finding during differentiation, initial formation of synapses, and synaptic plasticity in mature neurons. CD325 (N-cadherin) is a 130 kD single pass transmembrane protein with an extracellular region consists of five cadherin domains. N-cadherin is involved in organogenesis and in the maintenance of organ architecture by contributing to the sorting of heterogeneous cell types and in the cell adhesion needed to form tissues. N-cadherin is expressed by stem cells, myeloblasts, endothelial cells, fibroblasts, and also is expressed in neural and muscle tissues along with some types of carcinoma cells. CD325 associates with the cytoskeleton through catenin proteins.

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SynCAM molecules mediate homotypic adhesion in the neural synapse. These proteins are also known as Necl1-4 or cell adhesion molecule 1-4.

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CD56 is a single transmembrane glycoprotein also known as NCAM (neural cell adhesion molecule), Leu-19, or NKH1. It is a member of the Ig superfamily. The 140 kD isoform is expressed on NK and NKT cells. CD56 is also expressed in the brain (cerebellum and cortex) and at neuromuscular junctions. Certain large granular lymphocyte (LGL) leukemias, small-cell lung carcinomas, neuronal derived tumors, myelomas, and myeloid leukemias also express CD56. CD56 plays a role in homophilic and heterophilic adhesion via binding to itself or heparan sulfate.

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Protocadherins are a group of self adhering molecules belonging to the cadherin superfamily of proteins. They are predominantly expressed in neurons in widely diverse array. Unlike cadherin proteins, protocadherins do not bind to intracellular catenin molecules.

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SALM, also known as LRFN, is homotypic adhesion molecule that promotes neurite outgrowth in hippocampal neurons, regulates excitatory synapses, and induces the clustering of excitatory postsynaptic proteins, including DLG4, DLGAP1, GRIA1 (AMPA receptor subunit) and GRIN1 (NMDA receptor subunit).

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L1CAM, also known as CD171, is a neuronal cell adhesion molecule involved in axon guidance and cell migration with a strong implication in treatment-resistant cancers. This cell adhesion molecule plays an important role in nervous system development, including neuronal migration, and differentiation. Mutations in the gene cause three X-linked neurological syndromes known by the acronym CRASH (corpus callosum hypoplasia, retardation, aphasia, spastic paraplegia and hydrocephalus). CD171 has been shown to function as a cell adhesion molecule mediating homotypic and heterotypic cell-cell interactions in neuronal myelination, neurite outgrowth and regeneration.

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ADAM22 is a member of the ADAM (a disintegrin and metalloprotease domain) family, implicated in a variety of biological processes involving cell-cell and cell-matrix interactions, including fertilization, muscle development, and neurogenesis. Unlike other members of the ADAM protein family, the protein encoded by this gene lacks metalloprotease activity since it has no zinc-binding motif. The protein is highly expressed in the brain and may function as an integrin ligand in the brain. In mice, it has been shown to be essential for correct myelination in the peripheral nervous system.

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Calcium/Calmodulin-Dependent Serine Protein Kinase (CASK) is a multidomain scaffolding protein with a role in synaptic transmembrane protein anchoring and ion channel trafficking. It contributes to neural development and regulation of gene expression via interaction with the transcription factor TBR1. It binds to cell-surface proteins, including amyloid precursor protein, neurexins and syndecans.

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PSD95, also known as SAP-90, is a member of the MAGUK family, encoded by the the DLG4 gene. At postsynaptic sites, it mediates the scaffolding of NMDA receptors, AMPA receptors, potassium channels, and other associated signaling protein clusters. It plays an important role in synaptic plasticity and the stabilization of synaptic changes during long-term potentiation.

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SAP-102, also known as DLG3 or neuroendocrine-DLG, is a member of the MAGUK (membrane-associated guanylate kinase) superfamily. It interacts with a number of adhesion molecules as well as glutamate receptors on the postsynaptic membrane, mediating scaffolding of synaptic signaling.

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PSD-93, also known as DLG2 or Chapsyn-110, is a member of the MAGUK family important in the scaffolding of receptors with adhesion molecules on the postsynaptic membrane. It regulates surface expression of receptors by directly interacting with the cytoplasmic tail of NMDA receptor subunits and inward rectifying potassium channels, and is involved in the regulation of synaptic stability at synapses.

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SAPAP is also known as DAP-1 or GKAP, encoded by the DLGAP1 gene. It is enriched in the postsynaptic membrane and is responsible for connecting PSD-95 and SHANK, which serves as an adapter protein that interconnects receptors of the postsynaptic membrane including NMDA-type and metabotropic glutamate receptors, and the actin-based cytoskeleton.

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β-catenin is part of a complex of proteins that constitute adherens junctions (AJs). AJs are necessary for the creation and maintenance of epithelial cell layers by regulating cell growth and adhesion between cells. The encoded protein also anchors the actin cytoskeleton and may be responsible for transmitting the contact inhibition signal that causes cells to stop dividing once the epithelial sheet is complete. β-catenin also plays a key role in Wnt signaling pathways and thus is involved in neural differentiation, synaptic plasticity, neurodegenerative disease, and prevention of apoptosis. Finally, this protein binds to the product of the adenomatous polyposis coli (APC) gene, which is mutated in the adenomatous polyposis of the colon. Mutations in this gene are a cause of colorectal cancer (CRC), pilomatrixoma (PTR), medulloblastoma (MDB), and ovarian cancer.

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These belong to a class of G protein-coupled receptors that bind to norepinephrine (noradrenaline) and epinephrine (adrenaline). Adrenergic Receptors are composed of two main types, a and b, and further subdivided into several subtypes: α1A, α1B, α1C, α1D, α2A, α2B, α2C, α2D, β1, β2, β3. Combination of the different subtypes of the receptor generally determines whether the response it transmits will be stimulatory or inhibitory.

These are a class of G protein-coupled receptors that bind to the neurotransmitter dopamine. These receptors regulate a range of neurological processes including voluntary movement, memory, reward and hormonal regulation. There are five known subtypes of the dopamine receptor: D1, D2, D3, D4, D5. After dopamine is released into the synapse, it is re-accumulated into cells and stored in vesicles for later release by an integral membrane protein called Dopamine Transporter (DAT).

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These receptors respond to Gamma-Aminobutyric Acid (GABA), which is the major inhibitory neurotransmitter in the mammalian brain. There are two classes of GABA receptors: GABAA which are ligand-gated ion channels, and GABAB, that are G protein-coupled receptors. Upon activation, the GABAA receptor selectively conducts Cl− through its pore, resulting in hyperpolarization of the neuron. The GABAA receptor is generally pentameric and constitutes of several subunits which determines the receptor's conductance, affinity to agonists and other properties. 

In humans, the subunits are:
α subunits: GABRA1, GABRA2, GABRA3, GABRA4, GABRA5, GABRA6
β subunits: GABRB1, GABRB2, GABRB3
γ subunits: GABRG1, GABRG2, GABRG3
Other subunits: δ (GABRD), ε (GABRE), π (GABRP), and θ (GABRQ).

The GABAB receptors are usually considered as inhibitory receptors and they are linked to K+ channels in the cell through G-proteins. There are two subtypes of this receptor, GABAB1 (also known as GABA(B) receptor 1) and GABAB2 (GABA(B) receptor 2). 

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These receptors bind to glutamate which is the major excitatory neurotransmitter in the human brain. They are important in memory formation, learning and modulation of synaptic plasticity. Glutamate receptors can be broadly divided into two groups: ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). iGluRs include NMDA receptors, Kainate receptors and AMPA receptors, mGluRs include mGluR1, mGluR2, mGluR3, mGluR4, mGluR5, mGluR6, mGluR7.

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These receptors belong to the class of G protein–coupled receptors. They primarily bind to histamine. There are four types of histamine receptors: H1, H2, H3 and H4.

These receptors primarily respond to the neurotransmitter acetylcholine so they are also known as acetylcholine receptors. Besides acetylcholine, these receptors can also bind to nicotine and muscarine so they are also referred to as nicotinic acetylcholine receptors (nAChR) and muscarinic acetylcholine receptors mAChR respectively. The nAChRs are ligand-gated ion channels, whereas the mAChRs belong to the family of G-protein-coupled receptors.

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These belong to the family of G protein-coupled receptors and they respond to opiod. Common examples of endogenous opioids are endorphins, endomorphins, etc. There are four major subtypes of this receptor: µ, δ1/2, κ and nociceptin receptor. 

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These receptors are also known as 5-hydroxytryptamine receptors or 5-HT receptors and are activated by the neurotransmitter serotonin, which is their natural ligand. These receptors include both G protein-coupled receptors and ligand-gated ion channels and they mediate both excitatory and inhibitory neurotransmission. There are 7 known types of 5-HT receptors (5-HT1-7) and these are further subdivided into 14 subtypes.

These receptors are ionotropic receptors that bind to glycine. They primarily transmit Cl- ions through the membrane pore which mediates inhibitory neurotransmission.

Synaptic vesicles are contained in several different reserves that are mobilized following an action potential to replenish vesicles that have undergone fusion. Synapsins are a family of proteins that regulate the migration of the synaptic vesicles from these reserve pools to the membrane for neurotransmitter release.

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Synaptic vesicle trafficking is a multistep process involving several proteins and lipids. Synapsin, members of the kinesin motor family, and ATP produced by the mitochondria, are some of the factors implicated in the trafficking of synaptic vesicles to the membrane.

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Vesicles are loaded with neurotransmitters when they are at the synaptic site. This is an active process involving transporters and a vacuolar-type proton pump ATPase that provides a pH and electrochemical gradient. These transporters are selective for different classes of transmitters.

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Docking is the first step in the secretory pathway before vesicles fuse with the pre-synaptic membrane to release their contents. Once at the active zone, vesicle proteins, as well as, plasma membrane and cytoplasmic proteins, initiate the process of docking.

After initial docking, vesicles need to be ‘primed’ because they are not fusion competent. This priming step is thought to involve the formation of partially assembled SNARE (Soluble NSF Attachment Protein Receptor) complexes.

Following priming, vesicles fuse rapidly in response to calcium influx. This membrane fusion event is thought to be mediated directly by the formation of the SNARE (Soluble NSF Attachment Protein Receptor) complex. This complex consists of the vesicle-associated Synaptobrevin, and the plasma membrane-associated Syntaxin and SNAP25, that bridges the synaptic vesicle and plasma membrane together. The calcium sensor which positively regulates SNARE-dependent fusion of vesicles with membranes is Synaptotagmin.

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Membrane fusion connects the lumen of the vesicle with the synaptic cleft forming a pore, similar to a gap junction, leading to exocytosis and neurotransmitter release. There are two leading mechanisms of action by which this happens: full collapse fusion and the "kiss-and-run" method. During full collapse fusion, after release of the neurotransmitter, the pore dilates fully so that the vesicle collapses completely into the synaptic membrane, whereas for kiss-and-run fusion the vesicle transiently fuses with the plasma membrane and the pore closes rapidly by pinching off the membrane. Proteins potentially involved in forming the fusion pore include synaptophysin on the vesicle membrane and physophilin on the pre-synaptic membrane. 

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After fusion, synaptic vesicle membrane is recovered via clathrin-mediated endocytosis that is based on a membrane budding process and requires the formation of coated pits and coated vesicles. Several regulatory proteins such as endophilin, synaptojanin, and dynamin play a role to coordinate this process. As a final step in the recycling process, it has been proposed that clathrin-coated vesicles de-coat and subsequently fuse with early endosomes. New synaptic vesicles then regenerate by budding from the endosome. 

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